Index

_

__init__() (mmcci.CCIData method)

A

adata (mmcci.CCIData attribute)

add_lr_module_score() (in module mmcci.an) assays (mmcci.CCIData attribute)

C

calc_scale_factors() (in module mmcci.it) calculate_dissim() (in module mmcci.an) cci_scores (mmcci.CCIData attribute)

CCIData (class in mmcci) cell_network_clustering() (in module mmcci.an) chord_plot() (in module mmcci.pl) convert_stLearn() (in module mmcci.io)

D

dissim_hist() (in module mmcci.pl)

dissimilarity_score() (in module mmcci.sc)

F

from_dict() (in module mmcci.io)

G

get_lr_pairs() (in module mmcci.it)

get_network_diff() (in module mmcci.an)

I

integrate_networks() (in module mmcci.it)

L

lr_barplot() (in module mmcci.pl) lr_integration() (in module mmcci.it)

lr_interaction_clustering() (in module mmcci.an) lr_top_dissimilarity() (in module mmcci.pl) lrs_per_celltype() (in module mmcci.pl)

M

metadata (mmcci.CCIData attribute) mmcci.an module mmcci.CCIData_class module mmcci.io module mmcci.it module mmcci.pl module

mmcci.sc module module mmcci.an mmcci.CCIData_class mmcci.io mmcci.it mmcci.pl mmcci.sc multiply_non_zero_values() (in module mmcci.sc)

N

n_spots (mmcci.CCIData attribute)

network_plot() (in module mmcci.pl) networks (mmcci.CCIData attribute)

O

other_metadata (mmcci.CCIData attribute)

P

p_values (mmcci.CCIData attribute)

pathway_subset() (in module mmcci.an)

R

read_CCIData() (in module mmcci.io) read_CellChat() (in module mmcci.io) read_CellPhoneDB() (in module mmcci.io) read_NATMI() (in module mmcci.io)

read_network() (in module mmcci.io) read_Squidpy() (in module mmcci.io) read_stLearn() (in module mmcci.io) run_gsea() (in module mmcci.an)