mmcci.it.get_lr_pairs

mmcci.it.get_lr_pairs(samples: list, assay='raw', method='>=50%') → list[source]

Identifies the LR pairs present in a list of samples according to the given method.

Parameters:

samples (list) – A list of CCIData objects.
assay (str) (optional) – The assay or assays to use for identifying LR pairs. Defaults to “raw”.
method (str) (optional) – The method to use for identifying LR pairs. Options are “intersection”, “>=50%”, “>50%”, and “union”. Defaults to “>=50%”.

Returns:

A list of LR pairs that are present in a majority of samples

Return type:

list