mmcci.io.read_CellChat

mmcci.io.read_CellChat(path, n_spots=None) CCIData[source]

Reads a CellChat ligand-receptor analysis output (cellchat@dr) and converts it to a CCIData object.

Parameters:
  • path (str) – The output from cellchat@dr.

  • n_spots (int) (optional) – The number of spots. Defaults to None.

Returns:

The CCIData object.

Return type:

CCIData