mmcci.io.convert_stLearn

mmcci.io.convert_stLearn(adata, key='cell_type', save_anndata=True) → CCIData[source]

Reads a stLearn ligand-receptor analysis output and converts it to a CCIData object.

Parameters:

  • adata (AnnData) – The stLearn ligand-receptor analysis output.

  • key (str) (optional) – The key in adata.obs that was used for CCI. Defaults to “cell_type”.

  • save_anndata (bool) (optional) – Whether to save the AnnData object in the CCIData object. Defaults to True.

Returns:

The CCIData object.

Return type:

CCIData