mmcci.an.add_lr_module_score

mmcci.an.add_lr_module_score(sample, lr_list, key_name='score')[source]

Adds a module score to an AnnData object run through stLearn based on the interactions in a list of ligand-receptor pairs.

Parameters:

  • sample (AnnData) – The AnnData object to add the score to. Must be processed through stLearn.

  • lr_list (list) – The list of ligand-receptor pairs to use.

  • key_name (str) – The key to use for the score.

Returns:

The AnnData object with the module score added.

Return type:

AnnData